Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase | SAMN04488090_3778 | Not Available | Negative | 4662330 - 4663427 | 40587.2 |
| hd domain-containing protein | SAMN04488090_3779 | Not Available | Negative | 4664057 - 4665031 | 36968.1 |
| transcriptional regulator, arac family | SAMN04488090_3780 | Not Available | Negative | 4665341 - 4666192 | 32695.6 |
| hypothetical protein | SAMN04488090_3781 | Not Available | Positive | 4666502 - 4666999 | 17938.4 |
| hypothetical protein | SAMN04488090_3782 | Not Available | Negative | 4667067 - 4667546 | 18087.2 |
| hypothetical protein | SAMN04488090_3783 | Not Available | Negative | 4667536 - 4668012 | 18035.9 |
| hypothetical protein | SAMN04488090_3784 | Not Available | Negative | 4668389 - 4669657 | 48630.4 |
| uncharacterized protein, contains gba2_n and duf608 domains | SAMN04488090_3785 | Not Available | Positive | 4669930 - 4672620 | 99768.2 |
| hypothetical protein | SAMN04488090_3786 | Not Available | Negative | 4672851 - 4678046 | 180651.0 |
| hypothetical protein | SAMN04488090_3787 | Not Available | Negative | 4679363 - 4679782 | 15868.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
