Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerophosphoryl diester phosphodiesterase | SAMN04488090_3768 | Not Available | Positive | 4653203 - 4653994 | 29395.4 |
| phosphonate degradation operons associated hdig domain protein | SAMN04488090_3769 | Not Available | Positive | 4654000 - 4654581 | 22069.1 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488090_3770 | Not Available | Negative | 4654689 - 4655276 | 22717.3 |
| short-chain dehydrogenase | SAMN04488090_3771 | Not Available | Negative | 4655372 - 4656208 | 30425.9 |
| phage shock protein c (pspc) family protein | SAMN04488090_3772 | Not Available | Positive | 4656688 - 4657080 | 14687.2 |
| hypothetical protein | SAMN04488090_3773 | Not Available | Positive | 4657112 - 4657387 | 10335.3 |
| hypothetical protein | SAMN04488090_3774 | Not Available | Positive | 4657433 - 4658422 | 36659.3 |
| multicopper oxidase with three cupredoxin domains (includes cell division protein ftsp and spore coat protein cota) | SAMN04488090_3775 | Not Available | Negative | 4658587 - 4660806 | 84494.4 |
| protein of unknown function | SAMN04488090_3776 | Not Available | Negative | 4660871 - 4661683 | 29282.9 |
| hypothetical protein | SAMN04488090_3777 | Not Available | Positive | 4661785 - 4661979 | 6937.44 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
