Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488090_3536 | Not Available | Positive | 4382715 - 4383248 | 19235.3 |
| atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) | SAMN04488090_3537 | Not Available | Positive | 4383380 - 4386679 | 125751.0 |
| uncharacterized protein | SAMN04488090_3538 | Not Available | Positive | 4386727 - 4388832 | 78032.7 |
| cell wall-associated hydrolase, nlpc family | SAMN04488090_3539 | Not Available | Positive | 4388910 - 4389485 | 20692.8 |
| hypothetical protein | SAMN04488090_3540 | Not Available | Negative | 4389474 - 4389761 | 10722.8 |
| glycosyltransferase, gt2 family | SAMN04488090_3541 | Not Available | Negative | 4389763 - 4390773 | 38300.0 |
| glutamate-1-semialdehyde 2,1-aminomutase | SAMN04488090_3542 | Not Available | Negative | 4390903 - 4392189 | 45485.8 |
| abc-type branched-chain amino acid transport system, substrate-binding protein | SAMN04488090_3543 | Not Available | Negative | 4392205 - 4393866 | 61914.7 |
| yidc/oxa1 family membrane protein insertase | SAMN04488090_3544 | Not Available | Negative | 4393992 - 4395794 | 67049.1 |
| ctp synthase | SAMN04488090_3545 | Not Available | Negative | 4395963 - 4397609 | 61350.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
