Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phytanoyl-coa dioxygenase (phyh) | SAMN04488090_3516 | Not Available | Positive | 4358933 - 4359757 | 30946.9 |
| glycosyltransferase, gt2 family | SAMN04488090_3517 | Not Available | Positive | 4359754 - 4360707 | 36160.4 |
| trna threonylcarbamoyl adenosine modification protein, sua5/ycio/yrdc/ywlc family | SAMN04488090_3518 | Not Available | Positive | 4360712 - 4361332 | 23180.9 |
| hlyd family secretion protein | SAMN04488090_3519 | Not Available | Positive | 4361494 - 4362741 | 46188.9 |
| outer membrane protein tolc | SAMN04488090_3520 | Not Available | Positive | 4362738 - 4364189 | 55277.1 |
| putative abc transport system atp-binding protein | SAMN04488090_3521 | Not Available | Positive | 4364186 - 4364848 | 24420.8 |
| putative abc transport system permease protein | SAMN04488090_3522 | Not Available | Positive | 4364864 - 4366093 | 46090.4 |
| putative abc transport system permease protein | SAMN04488090_3523 | Not Available | Positive | 4366114 - 4367262 | 43277.9 |
| dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domains | SAMN04488090_3524 | Not Available | Positive | 4367384 - 4368748 | 50974.7 |
| pas fold | SAMN04488090_3525 | Not Available | Positive | 4368752 - 4370038 | 48021.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
