Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488090_3416 | Not Available | Negative | 4255910 - 4256854 | 35197.6 |
| udp-glucuronate 4-epimerase | SAMN04488090_3417 | Not Available | Negative | 4256858 - 4257826 | 36293.3 |
| 4-amino-4-deoxy-l-arabinose transferase | SAMN04488090_3418 | Not Available | Negative | 4257963 - 4259570 | 60507.6 |
| hypothetical protein | SAMN04488090_3419 | Not Available | Negative | 4259603 - 4259905 | 11144.5 |
| ribosome recycling factor | SAMN04488090_3420 | Not Available | Negative | 4260519 - 4261079 | 20729.9 |
| uridylate kinase | SAMN04488090_3421 | Not Available | Negative | 4261166 - 4261885 | 26128.1 |
| biotin carboxyl carrier protein | SAMN04488090_3422 | Not Available | Negative | 4262050 - 4262547 | 17995.9 |
| permease of the drug/metabolite transporter (dmt) superfamily | SAMN04488090_3423 | Not Available | Negative | 4262596 - 4263522 | 33689.1 |
| pp_03377 | SAMN04488090_3424 | Not Available | Negative | 4263639 - 4264628 | Not Available |
| hypothetical protein | SAMN04488090_3425 | Not Available | Positive | 4264702 - 4265589 | 32757.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
