Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488090_3286 | Not Available | Positive | 4114470 - 4115150 | 25178.6 |
| gscfa family protein | SAMN04488090_3287 | Not Available | Positive | 4115153 - 4116157 | 38077.3 |
| hypothetical protein | SAMN04488090_3288 | Not Available | Positive | 4116203 - 4116622 | 14978.9 |
| atp-binding protein involved in chromosome partitioning | SAMN04488090_3289 | Not Available | Positive | 4116712 - 4117821 | 39987.9 |
| fe-s cluster biogenesis protein nfua, 4fe-4s-binding domain | SAMN04488090_3290 | Not Available | Positive | 4117919 - 4118200 | 10260.2 |
| transglutaminase-like enzyme, putative cysteine protease | SAMN04488090_3291 | Not Available | Negative | 4118222 - 4119076 | 32003.0 |
| putative proteasome-type protease | SAMN04488090_3292 | Not Available | Negative | 4119221 - 4119958 | 27739.0 |
| uncharacterized conserved protein, alpha-e superfamily | SAMN04488090_3293 | Not Available | Negative | 4120031 - 4120993 | 37849.0 |
| atp synthase f1 subcomplex gamma subunit | SAMN04488090_3294 | Not Available | Negative | 4121525 - 4122406 | 32635.4 |
| f-type h+-transporting atpase subunit alpha | SAMN04488090_3295 | Not Available | Negative | 4122484 - 4124073 | 56968.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
