Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane receptor proteins, mostly fe transport | SAMN04488090_3256 | Not Available | Positive | 4085759 - 4087972 | 83131.7 |
| transcriptional regulator, arac family | SAMN04488090_3257 | Not Available | Positive | 4088075 - 4088629 | 21320.4 |
| hypothetical protein | SAMN04488090_3258 | Not Available | Positive | 4088724 - 4090055 | 49237.9 |
| copper chaperone copz | SAMN04488090_3259 | Not Available | Positive | 4090068 - 4090409 | 12359.2 |
| glutathionylspermidine synthase preatp-grasp | SAMN04488090_3260 | Not Available | Negative | 4090513 - 4091685 | 43673.2 |
| hypothetical protein | SAMN04488090_3261 | Not Available | Negative | 4091698 - 4092315 | 22543.1 |
| hypothetical protein | SAMN04488090_3262 | Not Available | Positive | 4092428 - 4093639 | 46419.5 |
| sugar phosphate isomerase/epimerase | SAMN04488090_3263 | Not Available | Negative | 4093590 - 4094516 | 35315.4 |
| deoxyribose-phosphate aldolase | SAMN04488090_3264 | Not Available | Negative | 4094529 - 4095218 | 24279.5 |
| thioredoxin reductase (nadph) | SAMN04488090_3265 | Not Available | Negative | 4095215 - 4096183 | 36053.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
