Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal transduction histidine kinase | SAMN04488090_3246 | Not Available | Negative | 4071261 - 4072526 | 49107.1 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04488090_3247 | Not Available | Negative | 4072523 - 4073200 | 25664.8 |
| ompa family protein | SAMN04488090_3248 | Not Available | Negative | 4073319 - 4074653 | 49348.0 |
| protein of unknown function | SAMN04488090_3249 | Not Available | Negative | 4074855 - 4075955 | 40530.4 |
| cubico group peptidase, beta-lactamase class c family | SAMN04488090_3250 | Not Available | Negative | 4076065 - 4077939 | 68811.5 |
| mfs transporter, fhs family, l-fucose permease | SAMN04488090_3251 | Not Available | Negative | 4077984 - 4079249 | 45561.0 |
| hypothetical protein | SAMN04488090_3252 | Not Available | Negative | 4079358 - 4080977 | 60988.2 |
| alpha-glucosidase | SAMN04488090_3253 | Not Available | Negative | 4080974 - 4082755 | 66389.7 |
| heparinase ii/iii-like protein | SAMN04488090_3254 | Not Available | Negative | 4082752 - 4085019 | 85073.3 |
| hypothetical protein | SAMN04488090_3255 | Not Available | Positive | 4085235 - 4085678 | 15941.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
