Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) | SAMN04488090_3176 | Not Available | Negative | 3995978 - 3996868 | 32712.4 |
| alpha-l-fucosidase | SAMN04488090_3177 | Not Available | Negative | 3996943 - 3998268 | 50485.9 |
| lysophospholipase l1 | SAMN04488090_3178 | Not Available | Negative | 3998270 - 3998926 | 24364.3 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488090_3179 | Not Available | Negative | 3998986 - 3999849 | 29928.1 |
| fusaric acid resistance protein-like | SAMN04488090_3180 | Not Available | Negative | 3999891 - 4000421 | 19714.9 |
| dna polymerase-3 subunit epsilon | SAMN04488090_3181 | Not Available | Positive | 4000844 - 4001467 | 23632.2 |
| phosphoglycerate kinase | SAMN04488090_3182 | Not Available | Negative | 4001530 - 4002717 | 42715.0 |
| methionine synthase (b12-independent) | SAMN04488090_3183 | Not Available | Positive | 4003445 - 4005781 | 88128.4 |
| vrr-nuc domain-containing protein | SAMN04488090_3184 | Not Available | Positive | 4005895 - 4007574 | 65374.6 |
| hypothetical protein | SAMN04488090_3185 | Not Available | Negative | 4007563 - 4008627 | 41305.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
