Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal transduction histidine kinase | SAMN04488090_0300 | Not Available | Positive | 391078 - 392433 | 50600.2 |
| hypothetical protein | SAMN04488090_0301 | Not Available | Positive | 392687 - 392965 | 10394.5 |
| membrane fusion protein, multidrug efflux system | SAMN04488090_0302 | Not Available | Positive | 393140 - 394216 | 40473.9 |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN04488090_0303 | Not Available | Positive | 394246 - 397410 | 116315.0 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN04488090_0304 | Not Available | Positive | 397403 - 398836 | 53470.3 |
| uncharacterized zinc-type alcohol dehydrogenase-like protein | SAMN04488090_0305 | Not Available | Positive | 399068 - 400123 | 38010.5 |
| mfs transporter, dha1 family, bicyclomycin/chloramphenicol resistance protein | SAMN04488090_0306 | Not Available | Positive | 400297 - 401532 | 44050.9 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04488090_0307 | Not Available | Negative | 401529 - 402236 | 25751.7 |
| predicted amidohydrolase | SAMN04488090_0308 | Not Available | Negative | 402338 - 403297 | 35558.8 |
| helix-turn-helix domain-containing protein | SAMN04488090_0309 | Not Available | Negative | 403370 - 404149 | 28729.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
