Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| por secretion system c-terminal sorting domain-containing protein | SAMN04488090_3026 | Not Available | Positive | 3826951 - 3827286 | 11940.2 |
| hypothetical protein | SAMN04488090_3027 | Not Available | Positive | 3828284 - 3829582 | 48795.0 |
| hypothetical protein | SAMN04488090_3028 | Not Available | Positive | 3829593 - 3830297 | 26814.3 |
| Trna-lys | Not Available | Not Available | Positive | 3831429 - 3831504 | Not Available |
| hypothetical protein | SAMN04488090_3030 | Not Available | Positive | 3831578 - 3832303 | 28334.6 |
| short-chain dehydrogenase | SAMN04488090_3031 | Not Available | Negative | 3832316 - 3833131 | 29319.6 |
| gliding motility-associated c-terminal domain-containing protein | SAMN04488090_3032 | Not Available | Negative | 3833186 - 3835438 | 82793.5 |
| 23s rrna m(5)u-1939 methyltransferase | SAMN04488090_3033 | Not Available | Positive | 3835531 - 3836946 | 53109.0 |
| transferase hexapeptide (six repeat-containing protein) | SAMN04488090_3034 | Not Available | Positive | 3837003 - 3837671 | 24519.6 |
| primary replicative dna helicase | SAMN04488090_3035 | Not Available | Negative | 3837710 - 3839422 | 62485.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
