Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488090_0018 | Not Available | Negative | 22702 - 23271 | 21831.0 |
| calcineurin-like phosphoesterase | SAMN04488090_0019 | Not Available | Negative | 23611 - 24408 | 30274.8 |
| 3',5'-cyclic amp phosphodiesterase cpda | SAMN04488090_0020 | Not Available | Negative | 24566 - 25423 | 32960.1 |
| starch-binding associating with outer membrane | SAMN04488090_0021 | Not Available | Negative | 25581 - 27254 | 62690.5 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_0022 | Not Available | Negative | 27270 - 30749 | 127429.0 |
| fecr family protein | SAMN04488090_0023 | Not Available | Negative | 30899 - 31954 | 39727.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488090_0024 | Not Available | Negative | 32033 - 32650 | 24428.0 |
| s-formylglutathione hydrolase frmb | SAMN04488090_0025 | Not Available | Negative | 32737 - 33555 | 30842.7 |
| phosphonoacetate hydrolase | SAMN04488090_0026 | Not Available | Positive | 33696 - 34253 | 20605.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_0027 | Not Available | Positive | 35134 - 38193 | 110443.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
