Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN04488090_2986 | Not Available | Negative | 3787930 - 3788319 | 14687.0 |
| Trna-met | Not Available | Not Available | Positive | 3788475 - 3788548 | Not Available |
| dna polymerase iii, delta subunit | SAMN04488090_2988 | Not Available | Negative | 3789448 - 3790467 | 38399.3 |
| acyl carrier protein phosphodiesterase | SAMN04488090_2989 | Not Available | Negative | 3790487 - 3791098 | 23050.7 |
| fkbp-type peptidyl-prolyl cis-trans isomerase slyd | SAMN04488090_2990 | Not Available | Positive | 3791261 - 3791779 | 19137.6 |
| dcmp deaminase | SAMN04488090_2991 | Not Available | Negative | 3791821 - 3792291 | 17035.4 |
| protein of unknown function | SAMN04488090_2992 | Not Available | Positive | 3792405 - 3792962 | 21012.3 |
| phosphotransferase enzyme family protein | SAMN04488090_2993 | Not Available | Negative | 3792952 - 3794277 | 50468.9 |
| dna-binding transcriptional regulator, acrr family | SAMN04488090_2994 | Not Available | Negative | 3794301 - 3794936 | 24991.5 |
| exonuclease, dna polymerase iii, epsilon subunit family | SAMN04488090_2995 | Not Available | Positive | 3795198 - 3795815 | 23027.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
