Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488090_2976 | Not Available | Negative | 3772338 - 3774038 | 64035.8 |
| tola-binding protein | SAMN04488090_2977 | Not Available | Negative | 3774087 - 3777095 | 112877.0 |
| predicted metalloprotease, contains c-terminal pdz domain | SAMN04488090_2978 | Not Available | Positive | 3777358 - 3779097 | 65669.5 |
| hypothetical protein | SAMN04488090_2979 | Not Available | Negative | 3779135 - 3779380 | 9441.11 |
| tfp pilus assembly protein pilf | SAMN04488090_2980 | Not Available | Positive | 3779387 - 3780460 | 40480.0 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase | SAMN04488090_2981 | Not Available | Negative | 3780599 - 3782314 | 63324.7 |
| rna polymerase primary sigma factor | SAMN04488090_2982 | Not Available | Negative | 3782637 - 3783500 | 32751.2 |
| polyribonucleotide nucleotidyltransferase | SAMN04488090_2983 | Not Available | Negative | 3783580 - 3785790 | 80775.9 |
| small subunit ribosomal protein s15 | SAMN04488090_2984 | Not Available | Negative | 3786052 - 3786327 | 10389.7 |
| lipopolysaccharide export system permease protein | SAMN04488090_2985 | Not Available | Negative | 3786387 - 3787907 | 57831.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
