Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domain | SAMN04488090_2936 | Not Available | Positive | 3731680 - 3732753 | 40566.0 |
| murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domain | SAMN04488090_2937 | Not Available | Positive | 3732859 - 3733935 | 41236.9 |
| bacillithiol biosynthesis deacetylase bshb1 | SAMN04488090_2938 | Not Available | Positive | 3733935 - 3734654 | 27006.8 |
| aromatic ring-opening dioxygenase, catalytic subunit, ligb family | SAMN04488090_2939 | Not Available | Negative | 3734788 - 3735615 | 31057.0 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488090_2940 | Not Available | Positive | 3735725 - 3736822 | 41404.9 |
| rhamnogalacturonyl hydrolase yesr | SAMN04488090_2941 | Not Available | Negative | 3736935 - 3738059 | 42731.2 |
| pyridoxamine 5'-phosphate oxidase | SAMN04488090_2942 | Not Available | Negative | 3738149 - 3738793 | 24575.7 |
| protein of unknown function | SAMN04488090_2943 | Not Available | Positive | 3738941 - 3741067 | 80493.9 |
| hypothetical protein | SAMN04488090_2944 | Not Available | Positive | 3741237 - 3742238 | 38406.8 |
| Trna-thr | Not Available | Not Available | Positive | 3742420 - 3742492 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
