Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucose-6-phosphate 1-dehydrogenase | SAMN04488090_2916 | Not Available | Positive | 3707700 - 3709214 | 57821.0 |
| 6-phosphogluconolactonase | SAMN04488090_2917 | Not Available | Positive | 3709219 - 3709941 | 26330.9 |
| beta-galactosidase | SAMN04488090_2918 | Not Available | Positive | 3710083 - 3711276 | 45798.8 |
| alpha-l-rhamnosidase | SAMN04488090_2919 | Not Available | Positive | 3711282 - 3713987 | 100785.0 |
| sugar phosphate isomerase/epimerase | SAMN04488090_2920 | Not Available | Positive | 3714043 - 3714885 | 31573.1 |
| por secretion system c-terminal sorting domain-containing protein | SAMN04488090_2921 | Not Available | Negative | 3715024 - 3715362 | 12136.3 |
| hypothetical protein | SAMN04488090_2922 | Not Available | Positive | 3715811 - 3716428 | 22336.3 |
| hypothetical protein | SAMN04488090_2923 | Not Available | Positive | 3716496 - 3717293 | 30478.2 |
| trna dimethylallyltransferase | SAMN04488090_2924 | Not Available | Positive | 3717290 - 3718228 | 35714.1 |
| protein of unknown function | SAMN04488090_2925 | Not Available | Negative | 3718293 - 3719102 | 29911.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
