Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted dehydrogenase | SAMN04488090_2906 | Not Available | Positive | 3693691 - 3695073 | 50938.5 |
| predicted dehydrogenase | SAMN04488090_2907 | Not Available | Positive | 3695080 - 3696207 | 41256.6 |
| type 1 glutamine amidotransferase (gatase1) | SAMN04488090_2908 | Not Available | Positive | 3696211 - 3697026 | 30828.7 |
| hypothetical protein | SAMN04488090_2909 | Not Available | Positive | 3697456 - 3698127 | 26639.6 |
| planctomycete cytochrome c | SAMN04488090_2910 | Not Available | Positive | 3698332 - 3701502 | 118055.0 |
| protein of unknown function | SAMN04488090_2911 | Not Available | Positive | 3701506 - 3702951 | 53732.7 |
| uncharacterized membrane protein | SAMN04488090_2912 | Not Available | Positive | 3702966 - 3704291 | 48611.2 |
| uncharacterized iron-regulated membrane protein | SAMN04488090_2913 | Not Available | Negative | 3704281 - 3705423 | 43192.6 |
| ribose 5-phosphate isomerase b | SAMN04488090_2914 | Not Available | Positive | 3705657 - 3706106 | 15902.9 |
| 6-phosphogluconate dehydrogenase (decarboxylating) | SAMN04488090_2915 | Not Available | Positive | 3706138 - 3707547 | 50786.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
