Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | SAMN04488090_2784 | Not Available | Positive | 3520578 - 3520952 | 14243.2 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488090_2785 | Not Available | Positive | 3521033 - 3521788 | 27075.9 |
| ion channel | SAMN04488090_2786 | Not Available | Positive | 3521848 - 3522510 | 24970.0 |
| uncharacterized conserved protein ybjt, contains nad(p)-binding and duf2867 domains | SAMN04488090_2787 | Not Available | Negative | 3522601 - 3523479 | 30178.0 |
| transcriptional regulator, hxlr family | SAMN04488090_2788 | Not Available | Positive | 3523561 - 3523953 | 14834.0 |
| dna-binding response regulator, narl/fixj family, contains rec and hth domains | SAMN04488090_2789 | Not Available | Positive | 3524918 - 3525556 | 24271.6 |
| conserved hypothetical protein | SAMN04488090_2790 | Not Available | Positive | 3525695 - 3526144 | 16910.1 |
| uncharacterized conserved protein, ntn-hydrolase superfamily | SAMN04488090_2791 | Not Available | Positive | 3526216 - 3527433 | 45064.7 |
| protein of unknown function | SAMN04488090_2792 | Not Available | Negative | 3527487 - 3528710 | 44189.6 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488090_2793 | Not Available | Negative | 3528724 - 3531117 | 89619.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
