Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN04488090_2774 | Not Available | Positive | 3506822 - 3507277 | 16911.0 |
| adp-ribose pyrophosphatase yjhb, nudix family | SAMN04488090_2775 | Not Available | Positive | 3507337 - 3508041 | 27189.6 |
| xylose isomerase | SAMN04488090_2776 | Not Available | Positive | 3508192 - 3509523 | 49467.0 |
| mannitol-1-phosphate/altronate dehydrogenases | SAMN04488090_2777 | Not Available | Negative | 3510093 - 3511244 | 42158.9 |
| transcriptional regulator | SAMN04488090_2778 | Not Available | Negative | 3511670 - 3512296 | 22728.1 |
| membrane fusion protein, multidrug efflux system | SAMN04488090_2779 | Not Available | Positive | 3512424 - 3513509 | 38460.9 |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN04488090_2780 | Not Available | Positive | 3513589 - 3516744 | 113459.0 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN04488090_2781 | Not Available | Positive | 3516741 - 3518123 | 50469.0 |
| cytosine/adenosine deaminase | SAMN04488090_2782 | Not Available | Negative | 3518206 - 3519507 | 47540.2 |
| arac-type dna-binding protein | SAMN04488090_2783 | Not Available | Negative | 3519588 - 3520421 | 31985.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
