Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cellulase (glycosyl hydrolase family 5) | SAMN04488090_2703 | Not Available | Negative | 3410734 - 3411810 | 40776.7 |
| duf1680 family protein | SAMN04488090_2704 | Not Available | Negative | 3411837 - 3413822 | 75594.3 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488090_2705 | Not Available | Positive | 3414094 - 3414744 | 25438.3 |
| fecr family protein | SAMN04488090_2706 | Not Available | Positive | 3414775 - 3415761 | 37859.2 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_2707 | Not Available | Positive | 3415783 - 3419283 | 130342.0 |
| starch-binding associating with outer membrane | SAMN04488090_2708 | Not Available | Positive | 3419289 - 3421151 | 69440.3 |
| protein of unknown function | SAMN04488090_2709 | Not Available | Positive | 3421148 - 3421852 | 25419.5 |
| glycosyl hydrolases family 43 | SAMN04488090_2710 | Not Available | Positive | 3422068 - 3423036 | 36359.4 |
| protein of unknown function | SAMN04488090_2711 | Not Available | Positive | 3423526 - 3425940 | 88973.6 |
| beta-xylosidase, gh43 family | SAMN04488090_2712 | Not Available | Positive | 3426061 - 3427098 | 38819.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
