Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| por secretion system c-terminal sorting domain-containing protein/choice-of-anchor a domain-containing protein | SAMN04488090_2683 | Not Available | Negative | 3382790 - 3384352 | 55897.9 |
| lysophospholipase l1 | SAMN04488090_2684 | Not Available | Negative | 3385050 - 3386813 | 65196.7 |
| protein of unknown function | SAMN04488090_2685 | Not Available | Negative | 3386895 - 3387734 | 31652.0 |
| c-terminal processing protease ctpa/prc, contains a pdz domain | SAMN04488090_2686 | Not Available | Negative | 3387974 - 3391183 | 122482.0 |
| protein of unknown function | SAMN04488090_2687 | Not Available | Negative | 3391414 - 3392130 | 26406.5 |
| nudix domain-containing protein | SAMN04488090_2688 | Not Available | Positive | 3392155 - 3392886 | 28645.5 |
| pyruvate carboxylase | SAMN04488090_2689 | Not Available | Negative | 3393007 - 3396486 | 129742.0 |
| hypothetical protein | SAMN04488090_2690 | Not Available | Negative | 3396910 - 3397371 | 16973.6 |
| hypothetical protein | SAMN04488090_2691 | Not Available | Negative | 3397853 - 3398020 | 5796.11 |
| putative membrane protein | SAMN04488090_2692 | Not Available | Negative | 3398086 - 3398643 | 22130.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
