Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase cbb3-type subunit i/ii | SAMN04488090_2623 | Not Available | Positive | 3305970 - 3308120 | 81680.7 |
| hypothetical protein | SAMN04488090_2624 | Not Available | Positive | 3308169 - 3308327 | 5950.58 |
| cytochrome c oxidase cbb3-type subunit 3 | SAMN04488090_2625 | Not Available | Positive | 3308357 - 3309130 | 28236.9 |
| cytochrome c oxidase accessory protein fixg | SAMN04488090_2626 | Not Available | Positive | 3309173 - 3310570 | 52886.3 |
| fixh protein | SAMN04488090_2627 | Not Available | Positive | 3310671 - 3311090 | 15998.1 |
| hypothetical protein | SAMN04488090_2628 | Not Available | Positive | 3311101 - 3311793 | 24694.2 |
| hypothetical protein | SAMN04488090_2629 | Not Available | Positive | 3312088 - 3313362 | 46603.5 |
| glycosyltransferase like family 2 | SAMN04488090_2630 | Not Available | Positive | 3313814 - 3314608 | 30595.2 |
| predicted component of the ribosome quality control (rqc) complex, yloa/tae2 family, contains fibronectin-binding (fbpa) and duf814 domains | SAMN04488090_2631 | Not Available | Negative | 3314703 - 3316268 | 60796.6 |
| abc-2 type transport system atp-binding protein | SAMN04488090_2632 | Not Available | Positive | 3316346 - 3316981 | 24053.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
