Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| threonine/homoserine/homoserine lactone efflux protein | SAMN04488090_2603 | Not Available | Negative | 3288351 - 3288983 | 23238.5 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN04488090_2604 | Not Available | Negative | 3289027 - 3289659 | 23845.9 |
| 2-dehydro-3-deoxyphosphogluconate aldolase / (4s)-4-hydroxy-2-oxoglutarate aldolase | SAMN04488090_2605 | Not Available | Negative | 3289732 - 3290397 | 24305.5 |
| 2-dehydro-3-deoxygluconokinase | SAMN04488090_2606 | Not Available | Negative | 3290423 - 3291430 | 36477.3 |
| predicted oxidoreductase | SAMN04488090_2607 | Not Available | Negative | 3291505 - 3292476 | 36661.4 |
| hydroxypyruvate isomerase | SAMN04488090_2608 | Not Available | Negative | 3292716 - 3293639 | 34051.9 |
| hypothetical protein | SAMN04488090_2609 | Not Available | Negative | 3293736 - 3294116 | 13424.1 |
| hypothetical protein | SAMN04488090_2610 | Not Available | Negative | 3294140 - 3294604 | 17699.1 |
| l,d-transpeptidase catalytic domain | SAMN04488090_2611 | Not Available | Positive | 3294717 - 3295379 | 24350.1 |
| l,d-transpeptidase catalytic domain | SAMN04488090_2612 | Not Available | Negative | 3295340 - 3296500 | 43243.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
