Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane fusion protein, cobalt-zinc-cadmium efflux system | SAMN04488090_0240 | Not Available | Positive | 317913 - 319070 | 40911.2 |
| transcriptional regulator glxa family, contains an amidase domain and an arac-type dna-binding hth domain | SAMN04488090_0241 | Not Available | Negative | 319073 - 320053 | 36778.2 |
| phnb protein | SAMN04488090_0242 | Not Available | Positive | 320168 - 320566 | 14500.5 |
| phnb protein | SAMN04488090_0243 | Not Available | Positive | 320572 - 320991 | 15610.4 |
| por secretion system c-terminal sorting domain-containing protein | SAMN04488090_0244 | Not Available | Positive | 321703 - 325530 | 132107.0 |
| protein of unknown function | SAMN04488090_0245 | Not Available | Positive | 325628 - 326293 | 26052.9 |
| hypothetical protein | SAMN04488090_0246 | Not Available | Positive | 326384 - 326935 | 21600.7 |
| hypothetical protein | SAMN04488090_0247 | Not Available | Positive | 327199 - 327705 | 19242.2 |
| uncharacterized damage-inducible protein dinb (forms a four-helix bundle) | SAMN04488090_0248 | Not Available | Negative | 327755 - 328249 | 18584.0 |
| predicted oxidoreductase | SAMN04488090_0249 | Not Available | Positive | 328421 - 329458 | 38406.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
