Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rubredoxin | SAMN04488090_2493 | Not Available | Negative | 3161094 - 3162575 | 56986.8 |
| ferredoxin-nitrate reductase | SAMN04488090_2494 | Not Available | Negative | 3162582 - 3166088 | 129240.0 |
| mfs transporter, nnp family, nitrate/nitrite transporter | SAMN04488090_2495 | Not Available | Negative | 3166100 - 3167383 | 45403.3 |
| alginate export | SAMN04488090_2496 | Not Available | Negative | 3167399 - 3168883 | 54429.4 |
| putative abc transport system permease protein | SAMN04488090_2497 | Not Available | Positive | 3169499 - 3170737 | 44688.0 |
| protein of unknown function | SAMN04488090_2498 | Not Available | Positive | 3170939 - 3172069 | 42488.4 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488090_2499 | Not Available | Positive | 3172056 - 3174494 | 91327.0 |
| hypothetical protein | SAMN04488090_2500 | Not Available | Positive | 3174682 - 3175140 | 17218.2 |
| neutral/alkaline non-lysosomal ceramidase, n-terminal | SAMN04488090_2501 | Not Available | Positive | 3175204 - 3176559 | 49549.6 |
| nadh dehydrogenase subunit a | SAMN04488090_2502 | Not Available | Positive | 3176703 - 3177107 | 15314.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
