Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gluconolactonase | SAMN04488090_2473 | Not Available | Negative | 3132418 - 3133311 | 33199.7 |
| hypothetical protein | SAMN04488090_2474 | Not Available | Negative | 3133376 - 3133828 | 15450.9 |
| spou rrna methylase family protein | SAMN04488090_2475 | Not Available | Negative | 3133855 - 3134484 | 23470.9 |
| glucuronokinase | SAMN04488090_2476 | Not Available | Positive | 3134499 - 3135533 | 38719.6 |
| udp-glucose pyrophosphorylase | SAMN04488090_2477 | Not Available | Positive | 3135549 - 3136421 | 32623.6 |
| coth protein | SAMN04488090_2478 | Not Available | Negative | 3136466 - 3138220 | 65302.6 |
| dipeptidyl aminopeptidase/acylaminoacyl peptidase | SAMN04488090_2479 | Not Available | Positive | 3138414 - 3141398 | 110605.0 |
| hypothetical protein | SAMN04488090_2480 | Not Available | Positive | 3141940 - 3145989 | 138046.0 |
| por secretion system c-terminal sorting domain-containing protein | SAMN04488090_2481 | Not Available | Positive | 3146050 - 3147099 | 36110.1 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488090_2482 | Not Available | Positive | 3147535 - 3149928 | 89688.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
