Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sec-independent protein translocase protein tata | SAMN04488090_2412 | Not Available | Positive | 3060576 - 3060737 | 5820.24 |
| protein of unknown function | SAMN04488090_2413 | Not Available | Negative | 3060788 - 3063106 | 85451.3 |
| starch-binding associating with outer membrane | SAMN04488090_2414 | Not Available | Negative | 3063110 - 3064549 | 53411.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_2415 | Not Available | Negative | 3064562 - 3067915 | 121994.0 |
| fecr family protein | SAMN04488090_2416 | Not Available | Negative | 3068067 - 3069107 | 39309.9 |
| rna polymerase sigma factor, sigma-70 family | SAMN04488090_2417 | Not Available | Positive | 3069265 - 3069831 | 22152.3 |
| hypothetical protein | SAMN04488090_2418 | Not Available | Positive | 3069909 - 3072386 | 90998.8 |
| hypothetical protein | SAMN04488090_2419 | Not Available | Positive | 3072426 - 3074054 | 60814.4 |
| hypothetical protein | SAMN04488090_2420 | Not Available | Positive | 3074425 - 3074577 | 5497.35 |
| metallopeptidase toxin 3 | SAMN04488090_2421 | Not Available | Positive | 3075122 - 3076411 | 48827.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
