Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488090_2392 | Not Available | Positive | 3026836 - 3027390 | 21377.9 |
| pap2 superfamily protein | SAMN04488090_2393 | Not Available | Positive | 3027449 - 3028159 | 25547.1 |
| transporter family protein | SAMN04488090_2394 | Not Available | Positive | 3028173 - 3028595 | 15117.3 |
| outer membrane receptor for ferrienterochelin and colicins | SAMN04488090_2395 | Not Available | Positive | 3028638 - 3030791 | 78925.6 |
| outer membrane protein assembly factor bama | SAMN04488090_2396 | Not Available | Negative | 3030792 - 3033125 | 88134.2 |
| asma family protein | SAMN04488090_2397 | Not Available | Negative | 3033130 - 3038178 | 182487.0 |
| uncharacterized membrane protein ypha, doxx/surf4 family | SAMN04488090_2398 | Not Available | Positive | 3038487 - 3039581 | 41315.3 |
| shikimate kinase | SAMN04488090_2399 | Not Available | Positive | 3039617 - 3040141 | 19724.9 |
| quinoprotein glucose dehydrogenase | SAMN04488090_2400 | Not Available | Negative | 3040143 - 3042212 | 74862.7 |
| transcriptional regulator, laci family | SAMN04488090_2401 | Not Available | Positive | 3042461 - 3043471 | 36834.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
