Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnase iii | SAMN04488090_2372 | Not Available | Negative | 3007935 - 3008708 | 29491.7 |
| 3-oxoacyl-[acyl-carrier-protein] synthase ii | SAMN04488090_2373 | Not Available | Negative | 3008757 - 3010004 | 44294.4 |
| acyl carrier protein | SAMN04488090_2374 | Not Available | Negative | 3010180 - 3010416 | 8559.96 |
| putative auto-transporter adhesin, head gin domain | SAMN04488090_2375 | Not Available | Negative | 3010594 - 3011280 | 24287.6 |
| lsu ribosomal protein l19p | SAMN04488090_2376 | Not Available | Positive | 3011567 - 3011923 | 13281.1 |
| l-fuconolactonase | SAMN04488090_2377 | Not Available | Positive | 3012146 - 3012979 | 32313.4 |
| l-fucose dehydrogenase | SAMN04488090_2378 | Not Available | Positive | 3013010 - 3013798 | 27929.3 |
| mfs transporter, fhs family, l-fucose permease | SAMN04488090_2379 | Not Available | Positive | 3013832 - 3015193 | 49039.0 |
| site-2 protease. metallo peptidase. merops family m50b | SAMN04488090_2380 | Not Available | Positive | 3015417 - 3016796 | 50867.9 |
| hypothetical protein | SAMN04488090_2381 | Not Available | Positive | 3016798 - 3017310 | 19385.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
