Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| capsule assembly protein wzi | SAMN04488090_2362 | Not Available | Positive | 2997298 - 2998686 | 51864.9 |
| transcriptional regulator, hxlr family | SAMN04488090_2363 | Not Available | Negative | 2998687 - 2999022 | 12870.6 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488090_2364 | Not Available | Positive | 2999108 - 2999851 | 26385.6 |
| atp-binding cassette, subfamily f, uup | SAMN04488090_2365 | Not Available | Negative | 2999907 - 3001763 | 69632.9 |
| chorismate synthase | SAMN04488090_2366 | Not Available | Negative | 3001777 - 3002856 | 39020.1 |
| oxygen tolerance | SAMN04488090_2367 | Not Available | Negative | 3002882 - 3004294 | 52089.2 |
| hypothetical protein | SAMN04488090_2368 | Not Available | Positive | 3004362 - 3004589 | 9158.61 |
| dihydroorotase | SAMN04488090_2369 | Not Available | Negative | 3004670 - 3006034 | 50528.0 |
| porphobilinogen synthase | SAMN04488090_2370 | Not Available | Negative | 3006213 - 3007190 | 36243.8 |
| hypothetical protein | SAMN04488090_2371 | Not Available | Negative | 3007374 - 3007847 | 16042.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
