Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rfae bifunctional protein, domain ii | SAMN04488090_2251 | Not Available | Negative | 2853430 - 2853912 | 17528.1 |
| hypothetical protein | SAMN04488090_2252 | Not Available | Negative | 2853909 - 2854895 | 36195.3 |
| l-aspartate 1-decarboxylase | SAMN04488090_2253 | Not Available | Negative | 2854972 - 2855673 | 25888.2 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_2254 | Not Available | Positive | 2855992 - 2858919 | 106675.0 |
| starch-binding associating with outer membrane | SAMN04488090_2255 | Not Available | Positive | 2858932 - 2860380 | 53356.7 |
| 1,4-alpha-glucan branching enzyme | SAMN04488090_2256 | Not Available | Negative | 2860687 - 2862669 | 76029.3 |
| por secretion system c-terminal sorting domain-containing protein | SAMN04488090_2257 | Not Available | Negative | 2863071 - 2864924 | 65570.3 |
| dna mismatch repair protein muts2 | SAMN04488090_2258 | Not Available | Negative | 2865223 - 2867670 | 92359.3 |
| d-3-phosphoglycerate dehydrogenase | SAMN04488090_2259 | Not Available | Negative | 2867706 - 2868650 | 34755.4 |
| 4-hydroxythreonine-4-phosphate dehydrogenase | SAMN04488090_2260 | Not Available | Positive | 2868911 - 2870653 | 65528.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
