Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted dehydrogenase | SAMN04488090_2161 | Not Available | Negative | 2731669 - 2732640 | 35238.4 |
| phosphoserine aminotransferase apoenzyme | SAMN04488090_2162 | Not Available | Negative | 2732695 - 2733819 | 42209.2 |
| d-3-phosphoglycerate dehydrogenase | SAMN04488090_2163 | Not Available | Negative | 2733948 - 2735852 | 71011.5 |
| hypothetical protein | SAMN04488090_2164 | Not Available | Negative | 2735999 - 2736991 | 38518.8 |
| uncharacterized membrane protein yeih | SAMN04488090_2165 | Not Available | Positive | 2737158 - 2737769 | 22171.7 |
| histidine kinase-, dna gyrase b-, and hsp90-like atpase | SAMN04488090_2166 | Not Available | Negative | 2737770 - 2739107 | 50738.7 |
| dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domains | SAMN04488090_2167 | Not Available | Negative | 2739317 - 2740711 | 52407.5 |
| rna polymerase, sigma subunit, ecf family | SAMN04488090_2168 | Not Available | Positive | 2741078 - 2741608 | 20700.6 |
| hlyd family secretion protein | SAMN04488090_2169 | Not Available | Positive | 2741722 - 2742987 | 47870.8 |
| putative abc transport system atp-binding protein | SAMN04488090_2170 | Not Available | Positive | 2743033 - 2743722 | 25814.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
