Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488090_2140 | Not Available | Negative | 2712733 - 2713176 | 17424.5 |
| arac-like ligand binding domain-containing protein | SAMN04488090_2141 | Not Available | Negative | 2713326 - 2714228 | 35310.4 |
| mfs transporter, sugar porter (sp) family | SAMN04488090_2142 | Not Available | Negative | 2714276 - 2715604 | 47471.0 |
| lipopolysaccharide biosynthesis regulator ycim, contains six tpr domains and a predicted metal-binding c-terminal domain | SAMN04488090_2143 | Not Available | Negative | 2715615 - 2718932 | 125461.0 |
| alpha-galactosidase | SAMN04488090_2144 | Not Available | Negative | 2718945 - 2721116 | 81881.0 |
| hypothetical protein | SAMN04488090_2145 | Not Available | Positive | 2721182 - 2721343 | 5792.38 |
| hypothetical protein | SAMN04488090_2146 | Not Available | Positive | 2721516 - 2722043 | 19787.0 |
| transcriptional regulator, deor family | SAMN04488090_2147 | Not Available | Negative | 2722230 - 2722979 | 26396.1 |
| fucose permease | SAMN04488090_2148 | Not Available | Negative | 2722976 - 2724163 | 41428.0 |
| sugar phosphate isomerase/epimerase | SAMN04488090_2149 | Not Available | Positive | 2724281 - 2725150 | 32386.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
