Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chitinase | SAMN04488090_2090 | Not Available | Positive | 2648348 - 2649481 | 42881.4 |
| peptidyl-dipeptidase dcp | SAMN04488090_2091 | Not Available | Positive | 2649548 - 2651644 | 79652.3 |
| four helix bundle sensory module for signal transduction | SAMN04488090_2092 | Not Available | Positive | 2651785 - 2652471 | 24657.2 |
| solute carrier family 10 (sodium/bile acid cotransporter), member 7 | SAMN04488090_2093 | Not Available | Positive | 2652526 - 2653551 | 37014.4 |
| l-ascorbate metabolism protein ulag, beta-lactamase superfamily | SAMN04488090_2094 | Not Available | Positive | 2653626 - 2654723 | 41151.8 |
| tfp pilus assembly protein pilf | SAMN04488090_2095 | Not Available | Positive | 2655544 - 2656263 | 26689.6 |
| starch-binding associating with outer membrane | SAMN04488090_2096 | Not Available | Negative | 2656374 - 2657885 | 55848.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_2097 | Not Available | Negative | 2657903 - 2661331 | 125996.0 |
| fecr family protein | SAMN04488090_2098 | Not Available | Negative | 2661568 - 2662581 | 38889.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488090_2099 | Not Available | Negative | 2662712 - 2663296 | 23179.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
