Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylaminoimidazolecarboxamide formyltransferase / imp cyclohydrolase | SAMN04488090_2020 | Not Available | Positive | 2563948 - 2565483 | 55920.6 |
| rna polymerase, sigma subunit, ecf family | SAMN04488090_2021 | Not Available | Positive | 2565953 - 2566555 | 23989.6 |
| fecr family protein | SAMN04488090_2022 | Not Available | Positive | 2566650 - 2567699 | 39217.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_2023 | Not Available | Positive | 2567881 - 2571486 | 132691.0 |
| starch-binding associating with outer membrane | SAMN04488090_2024 | Not Available | Positive | 2571511 - 2573253 | 65482.2 |
| por secretion system c-terminal sorting domain-containing protein | SAMN04488090_2025 | Not Available | Positive | 2573367 - 2576987 | 126588.0 |
| alpha-glucosidase | SAMN04488090_2026 | Not Available | Positive | 2577062 - 2578948 | 71511.9 |
| hypothetical protein | SAMN04488090_2027 | Not Available | Negative | 2579044 - 2581719 | 103906.0 |
| uncharacterized membrane protein ygdd, tmem256/duf423 family | SAMN04488090_2028 | Not Available | Positive | 2581902 - 2582273 | 13080.3 |
| lysophospholipase l1 | SAMN04488090_2029 | Not Available | Positive | 2582472 - 2583737 | 46635.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
