Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerol uptake facilitator protein | SAMN04488090_2000 | Not Available | Negative | 2535096 - 2535812 | 24656.1 |
| pbcv-specific basic adaptor domain-containing protein | SAMN04488090_2001 | Not Available | Positive | 2536003 - 2536380 | 13971.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488090_2002 | Not Available | Positive | 2536738 - 2537394 | 26052.0 |
| fecr family protein | SAMN04488090_2003 | Not Available | Positive | 2537432 - 2538430 | 37947.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_2004 | Not Available | Positive | 2538467 - 2541946 | 127549.0 |
| starch-binding associating with outer membrane | SAMN04488090_2005 | Not Available | Positive | 2541952 - 2543748 | 66354.3 |
| hypothetical protein | SAMN04488090_2006 | Not Available | Positive | 2543813 - 2546101 | 85364.4 |
| protein of unknown function | SAMN04488090_2007 | Not Available | Positive | 2546375 - 2547736 | 51856.0 |
| ntp pyrophosphatase, house-cleaning of non-canonical ntps | SAMN04488090_2008 | Not Available | Positive | 2548009 - 2548338 | 12632.1 |
| hypothetical protein | SAMN04488090_2009 | Not Available | Positive | 2548335 - 2550563 | 85795.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
