Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488090_0190 | Not Available | Positive | 245694 - 246314 | 23905.8 |
| fecr family protein | SAMN04488090_0191 | Not Available | Positive | 246352 - 247341 | 37911.2 |
| iron complex outermembrane recepter protein | SAMN04488090_0192 | Not Available | Positive | 247344 - 251021 | 133539.0 |
| starch-binding associating with outer membrane | SAMN04488090_0193 | Not Available | Positive | 251046 - 252731 | 62962.1 |
| peroxiredoxin | SAMN04488090_0194 | Not Available | Positive | 252763 - 253317 | 20638.1 |
| copper type ii ascorbate-dependent monooxygenase, c-terminal domain | SAMN04488090_0195 | Not Available | Positive | 253314 - 254603 | 48712.4 |
| alpha/beta hydrolase family protein | SAMN04488090_0196 | Not Available | Positive | 254613 - 257066 | 88730.4 |
| dna-binding response regulator, narl/fixj family, contains rec and hth domains | SAMN04488090_0197 | Not Available | Positive | 257251 - 257895 | 23931.5 |
| por secretion system c-terminal sorting domain-containing protein | SAMN04488090_0198 | Not Available | Positive | 258399 - 260351 | 69826.6 |
| glycerophosphoryl diester phosphodiesterase | SAMN04488090_0199 | Not Available | Negative | 260424 - 261314 | 33146.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
