Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit a | SAMN04488090_1930 | Not Available | Negative | 2454857 - 2456305 | 52821.3 |
| sec-independent protein translocase protein tata | SAMN04488090_1931 | Not Available | Negative | 2456391 - 2456591 | 7164.86 |
| uncharacterized membrane protein ykva, duf1232 family | SAMN04488090_1932 | Not Available | Negative | 2456690 - 2457127 | 16422.2 |
| nadp-dependent aldehyde dehydrogenase | SAMN04488090_1933 | Not Available | Negative | 2457203 - 2458750 | 54864.5 |
| 2-dehydro-3-deoxy-d-arabinonate dehydratase | SAMN04488090_1934 | Not Available | Negative | 2458772 - 2459596 | 30473.7 |
| transcriptional regulator | SAMN04488090_1935 | Not Available | Negative | 2459707 - 2460132 | 17019.3 |
| alanyl-trna synthetase | SAMN04488090_1936 | Not Available | Positive | 2460503 - 2463139 | 97738.6 |
| iron complex outermembrane recepter protein | SAMN04488090_1937 | Not Available | Positive | 2463346 - 2465889 | 92327.5 |
| 23s rrna pseudouridine955/2504/2580 synthase | SAMN04488090_1938 | Not Available | Negative | 2466025 - 2466747 | 27643.6 |
| moxr-like atpase | SAMN04488090_1939 | Not Available | Positive | 2466930 - 2467898 | 35714.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
