Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal transduction histidine kinase | SAMN04488090_1910 | Not Available | Negative | 2421143 - 2422513 | 52012.7 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04488090_1911 | Not Available | Negative | 2422541 - 2423224 | 26035.4 |
| hypothetical protein | SAMN04488090_1912 | Not Available | Negative | 2423316 - 2428793 | 198705.0 |
| hypothetical protein | SAMN04488090_1913 | Not Available | Positive | 2429062 - 2429835 | 30011.6 |
| alpha-l-fucosidase | SAMN04488090_1914 | Not Available | Positive | 2430165 - 2431562 | 52962.8 |
| hypothetical protein | SAMN04488090_1915 | Not Available | Negative | 2431606 - 2432835 | 46987.9 |
| hypothetical protein | SAMN04488090_1916 | Not Available | Negative | 2432904 - 2433266 | 13941.7 |
| Trna-met | Not Available | Not Available | Positive | 2433391 - 2433463 | Not Available |
| 3-hydroxyisobutyrate dehydrogenase | SAMN04488090_1918 | Not Available | Negative | 2433511 - 2434362 | 29995.3 |
| glyoxylase, beta-lactamase superfamily ii | SAMN04488090_1919 | Not Available | Negative | 2434429 - 2435268 | 31464.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
