Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ssu ribosomal protein s11p | SAMN04488090_1870 | Not Available | Positive | 2373605 - 2374000 | 14069.3 |
| ssu ribosomal protein s4p | SAMN04488090_1871 | Not Available | Positive | 2374178 - 2374786 | 22762.4 |
| dna-directed rna polymerase subunit alpha | SAMN04488090_1872 | Not Available | Positive | 2374929 - 2375918 | 37619.5 |
| large subunit ribosomal protein l17 | SAMN04488090_1873 | Not Available | Positive | 2376072 - 2376629 | 20343.1 |
| aminobenzoyl-glutamate utilization protein b | SAMN04488090_1874 | Not Available | Negative | 2376686 - 2378125 | 50823.8 |
| susd family protein | SAMN04488090_1875 | Not Available | Negative | 2378210 - 2379880 | 60231.5 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_1876 | Not Available | Negative | 2379892 - 2383128 | 117982.0 |
| carbamoyl-phosphate synthase small subunit | SAMN04488090_1877 | Not Available | Positive | 2383620 - 2384738 | 41096.7 |
| protein of unknown function | SAMN04488090_1878 | Not Available | Negative | 2384837 - 2385697 | 32392.8 |
| tonb-dependent receptor plug domain | SAMN04488090_1879 | Not Available | Negative | 2385705 - 2388062 | 87648.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
