Siphonobacter aquaeclarae strain DSM 21668

rodfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cytophagaceae

Genus

Siphonobacter

Description

Siphonobacter aquaeclarae strain DSM 21668 is characterized as a Gram-negative, non-motile rod. This strain exhibits facultative aerobe/anaerobe properties, allowing it to thrive in both oxygen-rich and oxygen-poor environments. It falls within the mesophilic temperature range, with an optimal growth temperature of 32°C. The genomic analysis of S. aquaeclarae strain DSM 21668 reveals a single replicon, contributing to its genetic stability and adaptability. The strain is cataloged under the accession number FNGS00000000.1, facilitating its identification and further research within microbial databases. The ecological significance of Siphonobacter aquaeclarae lies in its adaptability to varying oxygen conditions, which may allow it to occupy diverse ecological niches. Its mesophilic nature suggests a potential role in various environments, particularly those with moderate temperatures, where it could contribute to nutrient cycling and organic matter decomposition. Understanding the traits of S. aquaeclarae can provide insights into its potential applications in bioremediation or as a model organism for studying microbial interactions in aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusSiphonobacter
SpeciesSiphonobacter aquaeclarae
Strainstrain DSM 21668

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Siphonobacter aquaeclarae strain DSM 21668 genome assembly,

Gene Summary

Adenine Count

1418575 bp

Thymine Count

1407705 bp

Guanine Count

1683608 bp

Cytosine Count

1675647 bp

Genome Length

6189941 bp

Protein-coding Genes

4967 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lsu ribosomal protein l6pSAMN04488090_1860Not AvailablePositive2368270 - 236882720018.7
large subunit ribosomal protein l18SAMN04488090_1861Not AvailablePositive2368924 - 236927112250.7
ssu ribosomal protein s5pSAMN04488090_1862Not AvailablePositive2369283 - 236979517892.9
lsu ribosomal protein l30pSAMN04488090_1863Not AvailablePositive2369854 - 23700336580.21
lsu ribosomal protein l15pSAMN04488090_1864Not AvailablePositive2370081 - 237052715639.0
protein translocase subunit secy/sec61 alphaSAMN04488090_1865Not AvailablePositive2370574 - 237189648212.9
methionine aminopeptidase, type iSAMN04488090_1866Not AvailablePositive2371907 - 237269828900.7
bacterial translation initiation factor 1 (bif-1)SAMN04488090_1867Not AvailablePositive2372754 - 23729728338.35
lsu ribosomal protein l36pSAMN04488090_1868Not AvailablePositive2373024 - 23731404490.75
small subunit ribosomal protein s13SAMN04488090_1869Not AvailablePositive2373172 - 237354913994.2

Displaying genes 1851 – 1860 of 5014 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.