Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha,alpha-trehalase | SAMN04488090_1840 | Not Available | Negative | 2354786 - 2356372 | 59605.1 |
| dna polymerase iii, beta subunit | SAMN04488090_1841 | Not Available | Positive | 2356581 - 2357705 | 41206.6 |
| thioredoxin | SAMN04488090_1842 | Not Available | Positive | 2357873 - 2358304 | 15941.6 |
| beta-lactamase class d | SAMN04488090_1843 | Not Available | Positive | 2358365 - 2359189 | 31177.6 |
| membrane protein terc, possibly involved in tellurium resistance | SAMN04488090_1844 | Not Available | Negative | 2359309 - 2360121 | 29376.1 |
| lsu ribosomal protein l3p | SAMN04488090_1845 | Not Available | Positive | 2360729 - 2361346 | 21855.5 |
| lsu ribosomal protein l4p | SAMN04488090_1846 | Not Available | Positive | 2361403 - 2362029 | 22905.7 |
| large subunit ribosomal protein l23 | SAMN04488090_1847 | Not Available | Positive | 2362060 - 2362347 | 10506.9 |
| lsu ribosomal protein l2p | SAMN04488090_1848 | Not Available | Positive | 2362443 - 2363267 | 29927.8 |
| ssu ribosomal protein s19p | SAMN04488090_1849 | Not Available | Positive | 2363267 - 2363545 | 10476.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
