Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gliding motility-associated protein gldm | SAMN04488090_1820 | Not Available | Positive | 2323312 - 2324886 | 56377.6 |
| gliding motility associated protien gldn | SAMN04488090_1821 | Not Available | Positive | 2324899 - 2325945 | 38929.5 |
| type ix secretion system membrane protein, porp/sprf family | SAMN04488090_1822 | Not Available | Negative | 2326003 - 2327022 | 38412.2 |
| outer membrane receptor for ferrienterochelin and colicins | SAMN04488090_1823 | Not Available | Positive | 2327467 - 2330166 | 97695.2 |
| excinuclease abc subunit c | SAMN04488090_1824 | Not Available | Negative | 2330220 - 2332025 | 69772.5 |
| glycerate kinase | SAMN04488090_1825 | Not Available | Negative | 2332029 - 2333174 | 39524.3 |
| repeat domain-containing protein | SAMN04488090_1826 | Not Available | Positive | 2333325 - 2336513 | 116549.0 |
| penicillin-binding protein 1a | SAMN04488090_1827 | Not Available | Negative | 2336813 - 2339098 | 86183.5 |
| tonb-dependent outer membrane receptor, susc/raga subfamily, signature region | SAMN04488090_1828 | Not Available | Positive | 2339601 - 2342063 | 90928.9 |
| thiamine pyrophosphokinase | SAMN04488090_1829 | Not Available | Negative | 2342060 - 2342722 | 24803.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
