Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucosylceramidase | SAMN04488090_1810 | Not Available | Positive | 2312786 - 2314195 | 50895.2 |
| hypothetical protein | SAMN04488090_1811 | Not Available | Negative | 2314278 - 2314457 | 7034.28 |
| udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferase | SAMN04488090_1812 | Not Available | Positive | 2314670 - 2315875 | 44899.6 |
| uncharacterized conserved protein ybjt, contains nad(p)-binding and duf2867 domains | SAMN04488090_1813 | Not Available | Negative | 2315861 - 2316553 | 25579.3 |
| succinyl-coa synthetase alpha subunit | SAMN04488090_1814 | Not Available | Positive | 2316754 - 2317644 | 30927.7 |
| protein of unknown function | SAMN04488090_1815 | Not Available | Positive | 2317695 - 2318921 | 47709.8 |
| uroporphyrinogen-iii synthase | SAMN04488090_1816 | Not Available | Positive | 2319029 - 2319814 | 29676.8 |
| type ix secretion system membrane protein, porp/sprf family | SAMN04488090_1817 | Not Available | Positive | 2319986 - 2320936 | 34928.6 |
| gliding motility-associated lipoprotein gldk/gliding motility-associated lipoprotein gldk,tigr03529/gliding motility-associated lipoprotein gldj,tigr03530 | SAMN04488090_1818 | Not Available | Positive | 2321219 - 2322334 | 42074.3 |
| gliding motility-associated protein gldl | SAMN04488090_1819 | Not Available | Positive | 2322449 - 2323261 | 29381.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
