Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488090_1800 | Not Available | Positive | 2297470 - 2297820 | 12439.1 |
| secd/secf fusion protein | SAMN04488090_1801 | Not Available | Positive | 2297909 - 2300983 | 110325.0 |
| dihydrofolate reductase | SAMN04488090_1802 | Not Available | Negative | 2301205 - 2301690 | 18419.7 |
| putative dna-binding domain-containing protein | SAMN04488090_1803 | Not Available | Negative | 2301754 - 2302458 | 26835.4 |
| beta-carotene 3-hydroxylase | SAMN04488090_1804 | Not Available | Positive | 2302625 - 2303074 | 17516.6 |
| signal recognition particle subunit ffh/srp54 (srp54) | SAMN04488090_1805 | Not Available | Negative | 2303218 - 2304543 | 48822.4 |
| isocitrate dehydrogenase (nadp) | SAMN04488090_1806 | Not Available | Positive | 2304786 - 2306015 | 46192.2 |
| transposase zinc-ribbon domain-containing protein | SAMN04488090_1807 | Not Available | Positive | 2306085 - 2308007 | 75308.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_1808 | Not Available | Positive | 2308289 - 2311243 | 108261.0 |
| ragb/susd domain-containing protein | SAMN04488090_1809 | Not Available | Positive | 2311265 - 2312734 | 54147.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
