Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488090_1728 | Not Available | Positive | 2208001 - 2208540 | 21551.1 |
| hypothetical protein | SAMN04488090_1729 | Not Available | Positive | 2208624 - 2208890 | 10760.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_1730 | Not Available | Positive | 2209140 - 2212529 | 123443.0 |
| starch-binding associating with outer membrane | SAMN04488090_1731 | Not Available | Positive | 2212554 - 2214200 | 59994.1 |
| hypothetical protein | SAMN04488090_1732 | Not Available | Positive | 2214264 - 2215520 | 45145.4 |
| phopq-activated pathogenicity-related protein | SAMN04488090_1733 | Not Available | Positive | 2215565 - 2216920 | 51344.6 |
| glycerophosphoryl diester phosphodiesterase | SAMN04488090_1734 | Not Available | Positive | 2216956 - 2217792 | 30965.6 |
| l-ascorbate metabolism protein ulag, beta-lactamase superfamily | SAMN04488090_1735 | Not Available | Positive | 2217796 - 2218851 | 39857.9 |
| calcineurin-like phosphoesterase | SAMN04488090_1736 | Not Available | Positive | 2218848 - 2220584 | 66080.4 |
| nicotinamide mononucleotide transporter | SAMN04488090_1737 | Not Available | Negative | 2220674 - 2221264 | 22513.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
