Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488090_1688 | Not Available | Negative | 2159323 - 2161500 | 81741.0 |
| predicted neuraminidase (sialidase) | SAMN04488090_1689 | Not Available | Negative | 2161497 - 2162669 | 43395.6 |
| glutamate dehydrogenase (nad(p)+) | SAMN04488090_1690 | Not Available | Negative | 2162910 - 2164181 | 46437.3 |
| transcriptional regulator, trar/dksa family | SAMN04488090_1691 | Not Available | Positive | 2164582 - 2164971 | 14723.4 |
| hypothetical protein | SAMN04488090_1692 | Not Available | Positive | 2165740 - 2166699 | 34615.3 |
| arac-type dna-binding protein | SAMN04488090_1693 | Not Available | Positive | 2166775 - 2167635 | 33112.9 |
| inosine-uridine nucleoside n-ribohydrolase | SAMN04488090_1694 | Not Available | Positive | 2167675 - 2168646 | 35717.0 |
| polyisoprenoid-binding protein ycei | SAMN04488090_1695 | Not Available | Positive | 2168779 - 2169312 | 19039.2 |
| predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domains | SAMN04488090_1696 | Not Available | Positive | 2169457 - 2170401 | 36844.2 |
| uncharacterized damage-inducible protein dinb (forms a four-helix bundle) | SAMN04488090_1697 | Not Available | Positive | 2170470 - 2170997 | 20425.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
