Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gliding motility-associated c-terminal domain-containing protein | SAMN04488090_1547 | Not Available | Positive | 1981391 - 1984705 | 119654.0 |
| beta-glucanase, gh16 family | SAMN04488090_1548 | Not Available | Positive | 1984842 - 1985666 | 31629.1 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488090_1549 | Not Available | Negative | 1985667 - 1986422 | 26774.6 |
| mannonate dehydratase | SAMN04488090_1550 | Not Available | Negative | 1986424 - 1989687 | 121487.0 |
| transcriptional regulator, laci family | SAMN04488090_1551 | Not Available | Positive | 1989962 - 1991101 | 42569.5 |
| ribonucleoside-diphosphate reductase beta chain | SAMN04488090_1552 | Not Available | Negative | 1991152 - 1992144 | 37866.4 |
| n-acetylglucosamine 6-phosphate deacetylase | SAMN04488090_1553 | Not Available | Negative | 1992514 - 1993635 | 40926.2 |
| metallo-beta-lactamase family protein | SAMN04488090_1554 | Not Available | Negative | 1994035 - 1995429 | 52516.6 |
| f5/8 type c domain-containing protein | SAMN04488090_1555 | Not Available | Negative | 1995442 - 1997181 | 66680.5 |
| comf family protein | SAMN04488090_1556 | Not Available | Negative | 1997254 - 1997943 | 25800.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
