Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN04488090_1527 | Not Available | Positive | 1962345 - 1963859 | 57090.1 |
| rna polymerase, sigma subunit, ecf family | SAMN04488090_1528 | Not Available | Positive | 1964169 - 1964768 | 23527.1 |
| hypothetical protein | SAMN04488090_1529 | Not Available | Positive | 1964743 - 1964994 | 9687.41 |
| dna-(apurinic or apyrimidinic site) lyase /endonuclease iii | SAMN04488090_1530 | Not Available | Positive | 1965059 - 1965721 | 24856.4 |
| rhomboid family protein | SAMN04488090_1531 | Not Available | Positive | 1965804 - 1966586 | 29383.2 |
| membrane associated serine protease, rhomboid family | SAMN04488090_1532 | Not Available | Positive | 1966680 - 1967585 | 34173.9 |
| 1-deoxy-d-xylulose-5-phosphate synthase | SAMN04488090_1533 | Not Available | Positive | 1967769 - 1969700 | 70759.1 |
| oxidoreductase molybdopterin binding domain-containing protein | SAMN04488090_1534 | Not Available | Positive | 1969785 - 1970477 | 26586.7 |
| predicted secreted protein | SAMN04488090_1535 | Not Available | Positive | 1970481 - 1970828 | 12442.3 |
| phosphatidylserine decarboxylase | SAMN04488090_1536 | Not Available | Positive | 1970909 - 1971601 | 25975.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
