Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyltransferase domain-containing protein | SAMN04488090_1477 | Not Available | Negative | 1897518 - 1898249 | 27440.0 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04488090_1478 | Not Available | Positive | 1898422 - 1899120 | 25718.8 |
| ahpc/tsa family protein | SAMN04488090_1479 | Not Available | Negative | 1899164 - 1899796 | 23327.6 |
| amino acid/polyamine/organocation transporter, apc superfamily | SAMN04488090_1480 | Not Available | Negative | 1899965 - 1901452 | 53204.8 |
| integral membrane protein, ykoy family | SAMN04488090_1481 | Not Available | Negative | 1901679 - 1902452 | 28828.6 |
| thiol:disulfide interchange protein dsbd | SAMN04488090_1482 | Not Available | Positive | 1902681 - 1904756 | 75440.6 |
| l,d-peptidoglycan transpeptidase ykud, erfk/ybis/ycfs/ynhg family | SAMN04488090_1483 | Not Available | Positive | 1904728 - 1905414 | 25239.5 |
| xtp/ditp diphosphohydrolase | SAMN04488090_1484 | Not Available | Positive | 1905426 - 1906001 | 21434.3 |
| phospholipid/cholesterol/gamma-hch transport system substrate-binding protein | SAMN04488090_1485 | Not Available | Negative | 1906075 - 1907067 | 35650.3 |
| glycine hydroxymethyltransferase | SAMN04488090_1486 | Not Available | Positive | 1907298 - 1908593 | 47473.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
